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News and announcements.


1 RESQUE, a fast and accurate reduction-based network querying algorithm is now available for download. Visit [RESQUE] to download the source code of RESQUE. [NEW]
2 NAPAbench, a comprehensive benchmark for network alignment is now available at [NAPAbench]. You can download both the benchmark dataset as well as the software (and source code) that was used to generate the synthetic network families in the dataset. [NEW]
3 The paper "PicXAA-R: efficient structural alignment of multiple RNA sequences using a greedy approach" (by S. M.E. Sahraeian and B.-J. Yoon) won the Best Paper Award at the 9th Asia Pacific Bioinformatics Conference (APBC2011), held in Incheon, Korea, Jan 11-14, 2011.
4 PicXAA-Web, a web-based multiple sequence alignment tool developed based on PicXAA and PicXAA-R is now available. Visit [PicXAA-Web] to access the PicXAA web-server.
5 PicXAA & PicXAA-R, probabilistic non-progressive multiple protein/DNA/RNA sequence alignment algorithms are now available for download. Visit [PicXAA] to download the software and its source code.
6 PCSHMM, a software for finding structural alignment of RNAs (including pseudoknots) is now available.
- Visit [PCSHMM] to download the software.


1 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC 2014) will be held in Newport Beach, CA, on September 20, 2014. The workshop will be organized in conjunction with the 5th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics (ACM-BCB 2014). [NEW]
CNB-MAC-2014 Website:
Call for Papers: [Download]
2 EURASIP Journal on Bioinformatics and Systems Biology: Special Issue on Systems Engineering Approaches for Bioinformatics, Genomics and Computational Biology The aim of this special issue is to present the latest advances in the development and application of systems engineering methods in bioinformatics, genomics, and computational biology. We seek papers that report original research in all areas of bioinformatics, genomics, and computational molecular biology that are grounded on solid mathematical frameworks and systems engineering approaches. (submission closed) [Call for Papers]

Last update: May.1.2014